Classifying gene disease entities using Relevance Vector Machine Classifier
S. Vijaya1 , R. Radha2
Section:Research Paper, Product Type: Journal Paper
Volume-6 ,
Issue-7 , Page no. 497-502, Jul-2018
CrossRef-DOI: https://doi.org/10.26438/ijcse/v6i7.497502
Online published on Jul 31, 2018
Copyright © S. Vijaya, R. Radha . This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
View this paper at Google Scholar | DPI Digital Library
How to Cite this Paper
- IEEE Citation
- MLA Citation
- APA Citation
- BibTex Citation
- RIS Citation
IEEE Style Citation: S. Vijaya, R. Radha, “Classifying gene disease entities using Relevance Vector Machine Classifier,” International Journal of Computer Sciences and Engineering, Vol.6, Issue.7, pp.497-502, 2018.
MLA Style Citation: S. Vijaya, R. Radha "Classifying gene disease entities using Relevance Vector Machine Classifier." International Journal of Computer Sciences and Engineering 6.7 (2018): 497-502.
APA Style Citation: S. Vijaya, R. Radha, (2018). Classifying gene disease entities using Relevance Vector Machine Classifier. International Journal of Computer Sciences and Engineering, 6(7), 497-502.
BibTex Style Citation:
@article{Vijaya_2018,
author = {S. Vijaya, R. Radha},
title = {Classifying gene disease entities using Relevance Vector Machine Classifier},
journal = {International Journal of Computer Sciences and Engineering},
issue_date = {7 2018},
volume = {6},
Issue = {7},
month = {7},
year = {2018},
issn = {2347-2693},
pages = {497-502},
url = {https://www.ijcseonline.org/full_paper_view.php?paper_id=2464},
doi = {https://doi.org/10.26438/ijcse/v6i7.497502}
publisher = {IJCSE, Indore, INDIA},
}
RIS Style Citation:
TY - JOUR
DO = {https://doi.org/10.26438/ijcse/v6i7.497502}
UR - https://www.ijcseonline.org/full_paper_view.php?paper_id=2464
TI - Classifying gene disease entities using Relevance Vector Machine Classifier
T2 - International Journal of Computer Sciences and Engineering
AU - S. Vijaya, R. Radha
PY - 2018
DA - 2018/07/31
PB - IJCSE, Indore, INDIA
SP - 497-502
IS - 7
VL - 6
SN - 2347-2693
ER -
VIEWS | XML | |
391 | 301 downloads | 249 downloads |
Abstract
An increased interest has been noticed in Named Entity Recognition, particularly in the field of biomedical domain as identifying and extracting biomedical entities such as genes, diseases, proteins and drugs are tedious and demanding due to its ambiguity in biomedical terms. Named entity Recognition task consists of two phases. The first phase recognizes and extracts the entities whereas the second phase classifies the extracted entities under its associated classes. This research work is focused on the second phase of NER that is classifying the extracted entities with its associated class. In order to classify the entities, Relevance Vector Machine is trained and tested on two different datasets. For comparison purpose, HMM and SVM methods have been applied on the same datasets. The evaluation results shows that the RVM classifier performs better than HMM and SVM with high accuracy and less period of execution time.
Key-Words / Index Term
Named Entity Recognition, Biomedical domain , Biomedical entities, Entities Classification, RVM
References
[1] Michael Fleischman and Eduard Hovy,”Fine Grained Classification of Named Entities”, USC Information Science Institute, U.S.A.
[2] S.Vijaya, Dr.R.Radha,”Named Entity Recognition and Gene Disease Relationship Extraction Using Relevance Vector Machine(RVM) Classifier”, International Journal for Research in Applied Science & Engineering Technology (IJRASET), ISSN: 2321-9653; IC Value:45.98, SJ Impact Factor:6.887, Volume 5, Issue XII December 2017].
[3] Nor Liyana Mohd Shuib et al. (2014), “Data Mining Approach: Relevance Vector Machine for the Classification of Learning Style based on Learning Objects”, UKSim-AMSS 16th International Conference on Computing Modelling and Simulation.
[4] G.D.Zhou,”Recognizing names in biomedical texts using mutual information independence model and SVM plus sigmoid”, Int. J. Med. Inform, Vol 75,no. 6, pp.456-67, Jun 2006.
[5] S.Jonnalagadda, T.Cohen et al., “Using empirically constructed lexical resources for named entity recognition “, Biomed. Inform. Insights,vol 6, no.Suppl.1, pp.17-27,Jan 2013.
[6] S.Zhang and N.Elhadad,”Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts”, Journal of Biomedical Informatics 46 (2013) 1088-1098.
[7] Christopher Bowd et al.,”Relevance Vector Machine and Support Vector Machine Classifier Analysis of Scanning Laser Polarimetry Retinal Nerve Fiber Layer Measurements”, Machine Classifier Analysis of SLP Measurements, Investigative Ophthalmology &Visual Science, April 2005, Vol. 46, No.4.
[8] Stefan Andelic et al., “Text classification Based on Named Entities”, 7th International Conference on Information Society and Technology ICIST (2017)
[9] Rebholz-Schuhman et al.,”The CALBC Silver Standard Corpus for Biomedical Named Entities: A study in Harmonizing the contributions from Four Independent Named Entity Taggers”, Proc. LREC 2010.
[10] Michael E.Tipping,”Sparse Bayesian Learning and the Relevance Vector Machine”, Journal of Machine Learning Research 1 (2001) 211-244.
[11] Rong Xu et al, “Combining Text Classification and Hidden Markov Modeling Techniques for Structuring Randomized Clinical Trial Abstracts”, AMIA 2006, Symposium Proceedings Page-824.
[12] Janet Piñero et al., ”DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants.” Nucl. Acids Res. (2016) doi:10.1093/nar/gkw943
[13] Janet Piñero et al. , “ DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes”, Database (2015) doi:10.1093/database/bav028
[14] Landis,J.R, Koch.G.G(1977), “The measurement of observer agreement for categorical data”, Biometrics 33(1):159-174.